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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13614276_13620011_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13614276 - 13620011
Intron Length:
5736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
GTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATTTCTATCATA
Flanking Amino Acid:
TIFLSKSQTDVREKRKSLYI
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.1
35.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.5
0.8
0.8
80.6
37
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
51.4
0.04
2
70.28
36.3

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119