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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136200478_136251514_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136200478 - 136251514
Intron Length:
51037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
ATCCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTGTTATCA
Flanking Amino Acid:
GKMDLNNNTLKTKASVPMVL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.2
0.72
0.8
76.3
31.7
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
52.1
0.06
2.3
71.41
40.9

Associated Gene:

Gene:
ZFPM2
Ensembl Gene ID:
ENSAPLG00000015698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034916
136091344 - 136408264
316921
ENSAPLT00000032650
136091344 - 136330469
239126
ENSAPLT00000028095
136091344 - 136408264
316921
ENSAPLT00000025628
136091344 - 136408264
316921
ENSAPLT00000036015
136091344 - 136327111
235768