About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13620087_13693601_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13620087 - 13693601
Intron Length:
73515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAAAT
Flanking Amino Acid:
QHISDRENIDDLNMEFNPSD
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
24.6
-2.9
3.3
30.6
42.7
Minor BPS
59.2
0.37
1.7
77.65
38.8

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119