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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136324495_136330387_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136324495 - 136330387
Intron Length:
5893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ACTTCTTGGATT
Flanking Amino Acid:
YVEQGISVDFGNEEGIQGVA
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
59.9
0.39
1.4
73.39
38

Associated Gene:

Gene:
ZFPM2
Ensembl Gene ID:
ENSAPLG00000015698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032650
136091344 - 136330469
239126