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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1364883_1367175_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1364883 - 1367175
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGGGAAGC
5'SS Class:
weak_major
3'SS Sequence:
AATTCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
SICEVRQGQRVGDHKFSAHR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.1
49.8
41.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.6
0.55
0.8
71.5
34.6
Minor 5ss
29
-2.4
3.2
34.7
41.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
KLHL18
Ensembl Gene ID:
ENSAPLG00000004276
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004434
1364748 - 1376142
11395