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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136498648_136502440_R

Intron Information:

Intron Rank:
130798
Intron Class:
major
Intron Phase:
Intron Coordinates:
136498648 - 136502440
Intron Length:
3793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TATCTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78
0.63
0.9
73.7
35.3
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
79
0.9
1.1
82.05
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017610
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045098
136498290 - 136507893
9604