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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136573343_136575475_F

Intron Information:

Intron Rank:
143915
Intron Class:
major
Intron Phase:
Intron Coordinates:
136573343 - 136575475
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
73.4
38.9
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
81
0.7
0.7
76.6
25.6
Minor 5ss
39.5
-1.2
3
53.1
44.1
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025681
136569825 - 136575905
6081