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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136595564_136600626_F

Intron Information:

Intron Rank:
126747
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
136595564 - 136600626
Intron Length:
5063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
AAACTTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACATACATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
80
0.75
1
78.6
31
Major PPT
68.1
0.41
1.1
62.1
43.3
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
50.1
-0
1.8
60.82
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041597
136595050 - 136601855
6806