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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136607933_136622505_R

Intron Information:

Intron Rank:
144849
Intron Class:
major
Intron Phase:
Intron Coordinates:
136607933 - 136622505
Intron Length:
14573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCGTGTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
CTGCTATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
69.5
0.44
0.9
63.7
37
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
47.4
-0.1
1.7
62.92
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018925
136605851 - 136622763
16913