About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136622063_136622505_R

Intron Information:

Intron Rank:
144852
Intron Class:
major
Intron Phase:
Intron Coordinates:
136622063 - 136622505
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
62.8
0.4
1.5
71.52
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044058
136605851 - 136623688
17838