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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136668059_136695713_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136668059 - 136695713
Intron Length:
27655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TGTTTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATGTTTAATT
Flanking Amino Acid:
QLLLLVVSCCGNGALAEHSE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
70.1
40.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.9
0.63
0.9
75.5
38.4
Minor 5ss
36.1
-1.6
3
47.1
41.5
Minor BPS
69
0.67
1.7
84.32
36.9

Associated Gene:

Gene:
LRP12
Ensembl Gene ID:
ENSAPLG00000000692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000843
136667980 - 136719509
51530