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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136702998_136704894_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136702998 - 136704894
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CAATTATGACCT
Flanking Amino Acid:
HANPGEIITISFQDFDVQGS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
44.4
-0.3
1.9
59.77
43.1

Associated Gene:

Gene:
LRP12
Ensembl Gene ID:
ENSAPLG00000000692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042996
136623709 - 136717708
94000
ENSAPLT00000000843
136667980 - 136719509
51530