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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136711584_136715844_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136711584 - 136715844
Intron Length:
4261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTCAATACTT
Flanking Amino Acid:
EDFPVCSPNQASVLENLRLA
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
0.8
78.2
29.5
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
48.5
-0
2.1
73.95
43

Associated Gene:

Gene:
LRP12
Ensembl Gene ID:
ENSAPLG00000000692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042996
136623709 - 136717708
94000
ENSAPLT00000000843
136667980 - 136719509
51530