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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136724696_136725506_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136724696 - 136725506
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CACCACCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
ATTTTCTGAGCT
Flanking Amino Acid:
DGSQAPPAIEAPMSKQRLLI
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
78.3
0.7
1
80
32.1
Major PPT
64.7
0.33
0.9
54.4
35.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
64
0.52
1.7
83.25
37.5

Associated Gene:

Gene:
DPYS
Ensembl Gene ID:
ENSAPLG00000001792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001898
136723955 - 136758920
34966