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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136729685_136735680_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136729685 - 136735680
Intron Length:
5996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
GACTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTGAGAATT
Flanking Amino Acid:
HVAVTWWSNKVKEEMKSLVE
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.1
0.54
0.9
69.4
41.4
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
43.3
-0.4
2.3
68.92
42.5

Associated Gene:

Gene:
DPYS
Ensembl Gene ID:
ENSAPLG00000001792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001898
136723955 - 136758920
34966