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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136737166_136741507_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136737166 - 136741507
Intron Length:
4342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTACTTGATG
Flanking Amino Acid:
ARVLSSARREGKVVYGETIA
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
64
0.29
1.6
68.42
39.1

Associated Gene:

Gene:
DPYS
Ensembl Gene ID:
ENSAPLG00000001792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001898
136723955 - 136758920
34966