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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136741665_136742627_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136741665 - 136742627
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AGTTCCTAATGT
Flanking Amino Acid:
TPDFLMNLLANADLSVTATD
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78
0.63
0.8
74
31.1
Minor 5ss
40.5
-1.1
2.9
49
41.4
Minor BPS
48.6
-0
2.2
70.9
45.8

Associated Gene:

Gene:
DPYS
Ensembl Gene ID:
ENSAPLG00000001792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001898
136723955 - 136758920
34966