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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136757306_136758786_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
136757306 - 136758786
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATATCATATTG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
79.6
34.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85
0.79
0.6
81.4
23.7
Minor 5ss
42.8
-0.8
3.2
61.1
43.8
Minor BPS
46
-0.4
1.9
53.92
41.2

Associated Gene:

Gene:
DPYS
Ensembl Gene ID:
ENSAPLG00000001792
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001898
136723955 - 136758920
34966