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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136766360_136766676_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136766360 - 136766676
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAC
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CTTTAGATAACC
Flanking Amino Acid:
EAVRKKERTMKELEAWKELS
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.9
33
Major BPS
79.2
0.72
1
75
40
Major PPT
84.3
0.77
0.9
80.6
37
Minor 5ss
32.5
-2
3.3
39.7
41.6
Minor BPS
47.5
-0.2
2.4
68.34
43.1

Associated Gene:

Gene:
DCSTAMP
Ensembl Gene ID:
ENSAPLG00000002672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002691
136766171 - 136779203
13033