About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136766740_136767407_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136766740 - 136767407
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
TATGTCTTAGCA
Flanking Amino Acid:
KTAKNVFARTVNFWFPILKA
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.2
43.2
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
40
-1.1
3.2
57.4
46.8
Minor BPS
62
0.37
1.7
72.05
40.1

Associated Gene:

Gene:
DCSTAMP
Ensembl Gene ID:
ENSAPLG00000002672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002691
136766171 - 136779203
13033