About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136767729_136772439_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136767729 - 136772439
Intron Length:
4711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
LEIQIKLFQQRNENNFIIGV
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.8
0.76
0.8
79.4
32.6
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
DCSTAMP
Ensembl Gene ID:
ENSAPLG00000002672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002691
136766171 - 136779203
13033