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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136820585_136821174_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136820585 - 136821174
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTAGATTTACTT
Flanking Amino Acid:
VVKPGSKTLPAPYVKVYLLE
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.3
0.73
0.7
80.2
25.1
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
49
0
1.8
69.08
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028720
136819685 - 136836525
16841