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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136821277_136821976_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136821277 - 136821976
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
AAGTCATTGAAT
Flanking Amino Acid:
GRQTLATPSMGDIQVGMMDK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
74.2
0.54
1
65.8
45.3
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
52.9
0.17
1.8
68.87
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028720
136819685 - 136836525
16841