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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136822090_136823287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136822090 - 136823287
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
CATTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
GSMNSYSSEGNLIFPGVRLA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.7
0.83
0.7
84.4
30
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028720
136819685 - 136836525
16841