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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137062237_137075439_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
137062237 - 137075439
Intron Length:
13203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GCCAGCTCATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
TACCCCAAAACT
Flanking Amino Acid:
EIESESVSEKGGWLSPLWWH
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
58.9
0.2
1
54.9
40.1
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
50.4
0.09
2
71.79
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026265
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022675
137023730 - 137076268
52539