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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13719612_13721674_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13719612 - 13721674
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CACTTTTTACTT
Flanking Amino Acid:
RKRELRLMKNREAAKECRRR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.7
0.78
0.8
79.9
32.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
51.2
0.12
1.6
63.33
42.2

Associated Gene:

Gene:
CREM
Ensembl Gene ID:
ENSAPLG00000013843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030917
13719467 - 13747111
27645