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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13721832_13725694_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13721832 - 13725694
Intron Length:
3863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GATTCTTTAATA
Flanking Amino Acid:
LVMAVTGDETAATGDMPAYQ
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.9
0.72
0.9
77.4
34.7
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
77.1
0.85
1.1
77.28
33.3

Associated Gene:

Gene:
CREM
Ensembl Gene ID:
ENSAPLG00000013843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033393
13719868 - 13725824
5957