Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1372248_1374006_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1372248 - 1374006

Intron Length:

1759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAA

U12 Branch Point Sequence:

CCCACCTAAAGC

Flanking Amino Acid:

SKVESMNSKRSAMGTVVLDG

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

71.4

37.4

Major BPS

63.9

0.35

63.9

30.3

Major PPT

75.1

0.56

0.9

68.7

37.2

Minor 5ss

30.8

-2.2

3.8

47.7

Minor BPS

45.6

-0.3

50.09

46.8

Associated Gene:

Gene:

KLHL18

Ensembl Gene ID:

ENSAPLG00000004276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042506

1367176 - 1377142

9967

ENSAPLT00000004434

1364748 - 1376142

11395