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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137312227_137312948_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137312227 - 137312948
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGTATTGATT
Flanking Amino Acid:
ISSVKFNPIETYLLGSCASD
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.57
0.9
74.4
40.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
53
0.17
1.7
72.23
39

Associated Gene:

Gene:
DCAF13
Ensembl Gene ID:
ENSAPLG00000002811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040938
137295350 - 137317929
22580
ENSAPLT00000002864
137295350 - 137319277
23928