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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137317773_137319207_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137317773 - 137319207
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
ACTCTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTACTCTTATTG
Flanking Amino Acid:
VRETKLDLQRVPRNYDPVLH
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.9
0.67
0.9
73.9
34.7
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
55.5
0.03
1.7
61.23
40.9

Associated Gene:

Gene:
DCAF13
Ensembl Gene ID:
ENSAPLG00000002811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002864
137295350 - 137319277
23928