About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137322353_137323431_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137322353 - 137323431
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTACATTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCTTTACC
Flanking Amino Acid:
AGASWGLYFFFYNAIKAYKK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.9
0.63
0.9
68.9
41.4
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
74.2
0.74
1.6
84.06
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003056
137319425 - 137332278
12854