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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137324725_137330458_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137324725 - 137330458
Intron Length:
5734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TCCCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAACC
Flanking Amino Acid:
KTEGIRGLYKGFVPGLFGTS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.2
0.7
0.7
80
25.4
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
59.6
0.28
1.5
66.57
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003056
137319425 - 137332278
12854