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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137337004_137337596_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137337004 - 137337596
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTGTCCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGCTACCGAAGC
Flanking Amino Acid:
NYGIDLGKIAECTFTKMRSN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
75.7
0.58
0.8
74.1
31
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
42.3
-0.6
2.1
53.96
43.1

Associated Gene:

Gene:
CTHRC1
Ensembl Gene ID:
ENSAPLG00000003081
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003119
137335757 - 137340334
4578