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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137350914_137351385_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137350914 - 137351385
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCATTACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACTT
Flanking Amino Acid:
SGSVKRIGEGRVTPKNDFIE
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.2
0.66
0.9
70.3
40.1
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
61
0.42
1.9
80.74
41.5

Associated Gene:

Gene:
FZD6
Ensembl Gene ID:
ENSAPLG00000003220
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003295
137350757 - 137359436
8680
ENSAPLT00000021695
137350757 - 137374041
23285