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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13735143_13735282_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13735143 - 13735282
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATATATGAAACT
Flanking Amino Acid:
REILSRRPSYRKILNELSSD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.4
38.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.4
0.68
0.7
78.4
30.4
Minor 5ss
35.4
-1.7
3.2
51
45.2
Minor BPS
44.8
-0.3
2.3
67.84
43

Associated Gene:

Gene:
CREM
Ensembl Gene ID:
ENSAPLG00000013843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030917
13719467 - 13747111
27645
ENSAPLT00000014449
13719868 - 13747111
27244