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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137356306_137358433_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137356306 - 137358433
Intron Length:
2128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGTAT
5'SS Class:
major
3'SS Sequence:
TTAATTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTCTGTTAATT
Flanking Amino Acid:
IAWPEELECNRLVNCDETAP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.7
36.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.5
0.53
1
66.9
43.8
Minor 5ss
31.6
-2.1
3.6
45.4
49.7
Minor BPS
56.4
0.28
2.1
76.4
40.9

Associated Gene:

Gene:
FZD6
Ensembl Gene ID:
ENSAPLG00000003220
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021695
137350757 - 137374041
23285
ENSAPLT00000003295
137350757 - 137359436
8680