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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137358631_137373172_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137358631 - 137373172
Intron Length:
14542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAATA
Flanking Amino Acid:
DQDTAALQMEPFLTLMNLHC
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
1
75.5
27
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
47.6
-0.1
2.1
68.86
37.7

Associated Gene:

Gene:
FZD6
Ensembl Gene ID:
ENSAPLG00000003220
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021695
137350757 - 137374041
23285