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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13739426_13743633_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13739426 - 13743633
Intron Length:
4208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTGC
5'SS Class:
major
3'SS Sequence:
GTAACTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAAAC
Flanking Amino Acid:
VSVGFVSYAQVSVAASSAGR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
62.1
39.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76
0.59
1
69.4
41.3
Minor 5ss
38.8
-1.3
3
50.7
45.8
Minor BPS
75.8
0.79
1.3
80.32
33.8

Associated Gene:

Gene:
CREM
Ensembl Gene ID:
ENSAPLG00000013843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030917
13719467 - 13747111
27645