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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13743748_13746987_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13743748 - 13746987
Intron Length:
3240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATAAAACT
Flanking Amino Acid:
GESRISSVPQKLFELCRTPI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.9
0.51
0.9
70.2
41.3
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
49.2
0.02
2.1
76.27
40.2

Associated Gene:

Gene:
CREM
Ensembl Gene ID:
ENSAPLG00000013843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030917
13719467 - 13747111
27645