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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137438289_137439132_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137438289 - 137439132
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTGATAATT
Flanking Amino Acid:
YKIDCNLLEFNCSLGL*
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
75.1
33
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.8
85.4
28.2
Minor 5ss
37.4
-1.4
3.7
56
42.8
Minor BPS
56.2
0.27
2.3
84.17
37

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003472
137438232 - 137451214
12983