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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137440352_137441183_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137440352 - 137441183
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TTAACTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCTGATTAACT
Flanking Amino Acid:
ALRVFVESVLRYGLPVNFQA
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
59.5
0.38
2
79.5
42.4

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023847
137436943 - 137451214
14272
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855