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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137441282_137441774_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137441282 - 137441774
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
RLSTDKKKQFGPLVRWLKVN
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
73.5
37.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
44.5
-0.6
2.9
64.2
41.4
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855
ENSAPLT00000023847
137436943 - 137451214
14272