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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137441869_137441953_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137441869 - 137441953
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTATTCACT
Flanking Amino Acid:
DDFKHKAREYKFMVRDFQYN
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70
0.45
1
63.5
36.1
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
58
0.33
2
80.31
41.8

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023847
137436943 - 137451214
14272
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855