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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137442047_137443112_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137442047 - 137443112
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGAACCTTAATA
Flanking Amino Acid:
LAEMVVPRSSNVLFEDQDSY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
80
0.75
1
78.6
31
Major PPT
83.9
0.76
0.8
81.4
30.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
72.9
0.71
1.2
74.25
36.9

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855
ENSAPLT00000023847
137436943 - 137451214
14272