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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137443182_137444604_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137443182 - 137444604
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
CTAACAGTAATT
Flanking Amino Acid:
YLVTLLVIVPKLNYNDWVKQ
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
68.4
0.42
0.9
59
43
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
46.4
-0.1
2.2
66.64
44

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855
ENSAPLT00000023847
137436943 - 137451214
14272
ENSAPLT00000021104
137439129 - 137455106
15978