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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137447622_137448422_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137447622 - 137448422
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCAAAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTATCTTAACA
Flanking Amino Acid:
KVQENLLANGVDLVTYITRF
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
67.8
0.4
1
63.8
41.4
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
76.6
0.83
1.2
79.58
36.6

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855
ENSAPLT00000023847
137436943 - 137451214
14272