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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137449733_137451032_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137449733 - 137451032
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGCATTTTGATT
Flanking Amino Acid:
NSKFNIPDLKVGTLDVLVGL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
55.4
0.25
1.3
67.22
38.2

Associated Gene:

Gene:
ATP6V1C1
Ensembl Gene ID:
ENSAPLG00000003354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023847
137436943 - 137451214
14272
ENSAPLT00000021104
137439129 - 137455106
15978
ENSAPLT00000003472
137438232 - 137451214
12983
ENSAPLT00000024743
137437432 - 137456286
18855