About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137496498_137496666_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137496498 - 137496666
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATTTTACT
Flanking Amino Acid:
LLTTVFMNILMLNSVGEIWT
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.4
0.64
1
83.6
31.8
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
52.7
0.16
1.9
73.64
43

Associated Gene:

Gene:
AZIN1
Ensembl Gene ID:
ENSAPLG00000003774
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029379
137489196 - 137508882
19687