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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137496498_137498600_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137496498 - 137498600
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTCCTAACT
Flanking Amino Acid:
IDNCIYEHTHTGKRAFYVGD
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.6
0.76
0.8
82.4
34
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
74.1
0.83
1.6
91.01
31.7

Associated Gene:

Gene:
AZIN1
Ensembl Gene ID:
ENSAPLG00000003774
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024263
137489196 - 137509392
20197
ENSAPLT00000003897
137483649 - 137508882
25234