About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137502953_137504408_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137502953 - 137504408
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGCATTAACA
Flanking Amino Acid:
KELGVQIVGVKFHVSGSCKE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
67.6
0.55
1.7
77.59
38.9

Associated Gene:

Gene:
AZIN1
Ensembl Gene ID:
ENSAPLG00000003774
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029379
137489196 - 137508882
19687
ENSAPLT00000024263
137489196 - 137509392
20197
ENSAPLT00000003897
137483649 - 137508882
25234